Ah, I see what's up with the man page. It's documenting the Glibc getdents64() wrapper interface, so that's why it uses the Glibc types. But gpgme isn't using that wrapper, it's doing the syscall directly, so it should use the types the kernel uses, which as you've noticed are just generic unsigned and signed 64-bit integers, matching what my patch does.

Thanks for report. I've applied this change to master.

/include/linux/dirent.h defines

struct linux_dirent64 {
	u64		d_ino;
	s64		d_off;
	unsigned short	d_reclen;
	unsigned char	d_type;
	char		d_name[];
};

The official GPG binary from "c:\Program Files (x86)\GnuPG\bin\gpg.exe" does not exhibit this problem. I will report it to the msys2 folks.

Yes, it is the msys2 build of gpg, installed using the standard msys2 methods. The pwd in my example was from msys2 zsh.
I reproduced the error running under msys2 zsh and in Powershell.
If I understand your response correctly, you are saying this will not be fixed in gnupg itself? I can report it to the cygwin/msys2 folks of course, if you think that is best. But I still suspect the root cause is in gnupg, probably in homedir.c or the code that makes an absolute path from a relative one.
I will retest with the official gpg4win and let you know the results.

In D600#6448, @ikloecker wrote:

$ man getdents64

getdents64()
    The  original  Linux getdents() system call did not handle large filesystems and large file offsets.  Consequently, Linux 2.4
    added getdents64(), with wider types for the d_ino and d_off fields.  In addition, getdents64() supports an  explicit  d_type
    field.

    The  getdents64()  system call is like getdents(), except that its second argument is a pointer to a buffer containing struc‐
    tures of the following type:

        struct linux_dirent64 {
            ino64_t        d_ino;    /* 64-bit inode number */
            off64_t        d_off;    /* 64-bit offset to next structure */
            unsigned short d_reclen; /* Size of this dirent */
            unsigned char  d_type;   /* File type */
            char           d_name[]; /* Filename (null-terminated) */
        };

Go ahead and split it of, then. And setting a key to disabled in Kleopatra itself is not that urgent that it has to be in vsd33.

I think Kleopatra now respects the "disabled" state of OpenPGP certificates. I don't remember the outcome of our discussion about allowing to disable OpenPGP certificates from Kleopatra, but I think this should be split out of this ticket.

Tobias should have addressed all points (except using ISO format for dates which we won't change in Kleopatra).

$ man getdents64

getdents64()
    The  original  Linux getdents() system call did not handle large filesystems and large file offsets.  Consequently, Linux 2.4
    added getdents64(), with wider types for the d_ino and d_off fields.  In addition, getdents64() supports an  explicit  d_type
    field.

In D600#6445, @gniibe wrote:

If it is intentional change by musl (requiring some changes by an application), we can use __ino64_t_defined and __off64_t_defined macro to see if those types are defined or not.

Verified in pinentry-1.3.0.

Fixed in gpgme 1.21.0.

Fixed in pinentry 1.3.0.

pwd is not a standard Windows command. It is availabe in powershell but there I get

Fixed in 2.4.4.

If it is intentional change by musl (requiring some changes by an application), we can use __ino64_t_defined and __off64_t_defined macro to see if those types are defined or not.

I think so. We did not submit a modules for recertification with these changes, but we do not plan this in close future so you can consider it completed.

Can we close this?